1. MSstatsLiP::LiPRawData
    LiPRawData
    csv| xlsx| json| ndjson| rda| rds
    data.table|546 x 29
  2. MSstatsLiP::MSstatsLiP_Summarized
    MSstatsLiP_Summarized
    json| rda| rds
    list
  3. MSstatsLiP::MSstatsLiP_data
    MSstatsLiP_data
    json| rda| rds
    list
  4. MSstatsLiP::MSstatsLiP_model
    MSstatsLiP_model
    json| rda| rds
    list
  5. MSstatsLiP::SkylineTest
    SkylineTest
    csv| xlsx| json| ndjson| rda| rds
    data.table|2115 x 13
  6. MSstatsLiP::TrPRawData
    TrPRawData
    csv| xlsx| json| ndjson| rda| rds
    data.table|4692 x 29
  7. MSstatsLiP::raw_lip
    raw_lip
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|6944 x 29
  8. MSstatsLiP::raw_prot
    raw_prot
    csv| xlsx| json| ndjson| rda| rds
    spec_tbl_df|9120 x 29
  9. MSstatsLOBD::raw_data
    Example of dataset that contains spike in data for 43 distinct peptides.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|3870 x 16
  10. MSstatsLOBD::spikeindata
    Example of normalized datasets from raw_data,
    csv| xlsx| json| ndjson| rda| rds
    tbl_df|30 x 4
  11. MSstatsPTM::fragpipe_annotation
    Example annotation file for a TMT FragPipe experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|60 x 7
  12. MSstatsPTM::fragpipe_annotation_protein
    Example annotation file for a global profiling run TMT FragPipe experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|90 x 7
  13. MSstatsPTM::fragpipe_input
    Output of FragPipe TMT PTM experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|346 x 29
  14. MSstatsPTM::fragpipe_input_protein
    Output of FragPipe TMT global profiling experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|47 x 27
  15. MSstatsPTM::maxq_lf_annotation
    Example annotation file for a label-free MaxQuant experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 5
  16. MSstatsPTM::maxq_lf_evidence
    Example MaxQuant evidence file from the output of a label free experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|511 x 63
  17. MSstatsPTM::maxq_tmt_annotation
    Example annotation file for a TMT MaxQuant experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 7
  18. MSstatsPTM::maxq_tmt_evidence
    Example MaxQuant evidence file from the output of a TMT experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|199 x 96
  19. MSstatsPTM::pd_annotation
    Example annotation file for a label-free Proteome Discoverer experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 3
  20. MSstatsPTM::pd_psm_input
    Example Proteome Discoverer evidence file from the output of a label free experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|1657 x 60
  21. MSstatsPTM::pd_testing_output
    Example output of Proteome Discoverer converter
    csv| json| rda| rds
    list
  22. MSstatsPTM::raw.input
    Example of input PTM dataset for LabelFree/DDA/DIA experiments.
    csv| json| rda| rds
    list
  23. MSstatsPTM::raw.input.tmt
    Example of input PTM dataset for TMT experiments.
    json| rda| rds
    list
  24. MSstatsPTM::spectronaut_annotation
    Example annotation file for a label-free Spectronaut experiment.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|36 x 5
  25. MSstatsPTM::spectronaut_input
    Example Spectronaut evidence file from the output of a label free experiment
    csv| xlsx| json| ndjson| rda| rds
    data.frame|2683 x 23
  26. MSstatsPTM::summary.data
    Example of output from dataSummarizationPTM function for non-TMT data
    json| rda| rds
    list
  27. MSstatsPTM::summary.data.tmt
    Example of output from dataSummarizationPTM_TMT function for TMT data
    json| rda| rds
    list
  28. MSstatsShiny::annotation.mine
    Example annotation file for Spectromine
    csv| xlsx| json| ndjson| rda| rds
    data.frame|72 x 7
  29. MSstatsShiny::annotation.mq
    Example annotation file for MaxQuant
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 7
  30. MSstatsShiny::annotation.pd
    Example annotation file for PD
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 7
  31. MSstatsShiny::dia_skyline_model
    Example of Sklyine DDA dataset modeled using MSstats 'groupComparison' function.
    rda| rds
    list
  32. MSstatsShiny::dia_skyline_summarized
    Example of Sklyine DDA dataset processed using MSstats summarization function.
    json| rda| rds
    list
  33. MSstatsShiny::evidence
    Example evidence file for MaxQuant
    csv| xlsx| json| ndjson| rda| rds
    data.table|1075 x 105
  34. MSstatsShiny::example_dia_skyline
    Example of input Sklyine DDA dataset.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|41820 x 16
  35. MSstatsShiny::example_skyline_annotation
    Example annotation file
    csv| xlsx| json| ndjson| rda| rds
    data.frame|30 x 3
  36. MSstatsShiny::proteinGroups
    Example ProteinGroups file for MaxQuant
    csv| xlsx| json| ndjson| rda| rds
    data.table|8 x 611
  37. MSstatsShiny::raw.mine
    Example output file Spectromine
    csv| xlsx| json| ndjson| rda| rds
    data.frame|170 x 28
  38. MSstatsShiny::raw.om
    Example output file Spectromine
    csv| xlsx| json| ndjson| rda| rds
    data.frame|860 x 13
  39. MSstatsShiny::raw.pd
    Example output file PD
    csv| xlsx| json| ndjson| rda| rds
    data.table|2858 x 50
  40. MSstatsShiny::tmt_pd_model
    Example of TMT dataset modeled using MSstatsTMT 'groupComparisonTMT' function.
    rda| rds
    list
  41. MSstatsShiny::tmt_pd_summarized
    Example of TMT dataset processed using MSstatsTMT summarization function.
    json| rda| rds
    list
  42. MSstatsTMT::annotation.mine
    Example of annotation file for raw.mine, which is the output of SpectroMine.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|72 x 7
  43. MSstatsTMT::annotation.mq
    Example of annotation file for evidence, which is the output of MaxQuant.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 7
  44. MSstatsTMT::annotation.pd
    Example of annotation file for raw.pd, which is the PSM output of Proteome Discoverer
    csv| xlsx| json| ndjson| rda| rds
    data.frame|150 x 7
  45. MSstatsTMT::evidence
    Example of output from MaxQuant for TMT-10plex experiments.
    csv| xlsx| json| ndjson| rda| rds
    data.table|1075 x 105
  46. MSstatsTMT::input.pd
    Example of output from PDtoMSstatsTMTFormat function
    csv| json| rda| rds
    MSstatsValidated|20360 x 11
  47. MSstatsTMT::proteinGroups
    Example of proteinGroups file from MaxQuant for TMT-10plex experiments.
    csv| xlsx| json| ndjson| rda| rds
    data.table|8 x 611
  48. MSstatsTMT::quant.pd.msstats
    Example of output from proteinSummarizaiton function
    json| rda| rds
    list
  49. MSstatsTMT::raw.mine
    Example of output from SpectroMine for TMT-6plex experiments.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|170 x 28
  50. MSstatsTMT::raw.om
    Example of MSstatsTMT report from OpenMS for TMT-10plex experiments.
    csv| xlsx| json| ndjson| rda| rds
    data.frame|860 x 13
  51. MSstatsTMT::raw.pd
    Example of output from Proteome Discoverer 2.2 for TMT-10plex experiments.
    csv| xlsx| json| ndjson| rda| rds
    data.table|2858 x 50
  52. MSstatsTMT::test.pairwise
    Example of output from groupComparisonTMT function
    json| rda| rds
    list